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Bacterial Pathogens and Indicators, Viruses and Parasites in Various Food Commodities – April 1, 2017 to March 31, 2021

Food microbiology – Targeted surveys – Interim report

Summary

From April 1, 2017 to March 31, 2021, a total of 11,840 food samples were tested in a suite of ongoing targeted surveysFootnote 1 to investigate the presence of bacterial pathogens and indicators, viruses and parasites.

Of the samples tested, 99.3% were satisfactory, 0.7% were investigative and 0.02% were unsatisfactory. The Canadian Food Inspection Agency (CFIA) conducted appropriate follow-up activities and no illnesses have been reported related to any of these samples.

Final reports, which will include a detailed analysis of the results, will be published over the next few years as the surveys are completed.

What is an interim report

An interim report provides preliminary results related to on-going targeted surveysFootnote 1 which can vary in duration from several months to several years depending on the objective of each survey.

Will final reports be published

Yes, upon conclusion of the surveys, final reports or scientific publications will be published.

What foods were tested

The presence of bacterial pathogens and indicators, viruses and parasites were investigated in a variety of foods of the following commodities:

  • raw and pasteurized cheese
  • non-cow dairy milk
  • fresh fruits and vegetables
  • frozen-cut fruits
  • plant-based foods
  • frozen seafood
  • powdered infant formula
  • tahini

Why were these foods tested

The selected foods are all commonly consumed by Canadians of all agesFootnote 2. Unfortunately, most of these commodities have been associated with recalls and outbreaks of foodborne illnesses. Contamination with pathogens can occur at any step in the food supply chain such as during production, processing, packaging, distribution and/or at retail. Given that most of the commodities covered by this report are consumed without further preparation, the presence of pathogens creates the potential for foodborne illness.

When were the samples collected

The samples were collected from April 1, 2017 to March 31, 2021.

Where were the samples collected from

Samples were collected from national retail chains and local/regional grocery stores located in 11 major cities across Canada:

  • Halifax
  • Saint John or Moncton
  • Quebec City
  • Montreal
  • Toronto
  • Ottawa
  • Vancouver
  • Kelowna or Victoria
  • Calgary
  • Saskatoon
  • Winnipeg

A sample consisted of a single or multiple consumer-size packages from the same lot weighing at least 250 g. The planned number of samples to be collected from each city was based on the population of the province in which the city was located relative to the total population of Canada.

What methods were used to test the samples

Samples were analyzed using analytical methods published in Health Canada's Compendium of Analytical Methods for the Microbiological Analysis of FoodsFootnote 3 and CFIA internally-developed methods.

How were the samples assessed

The samples were assessed using criteria (tables 1, 2, 3) based on the principles of the following Health Canada documents: Health Products and Food Branch (HPFB) Standards and Guidelines for Microbiological Safety of Food – An Interpretive SummaryFootnote 4, Policy on Listeria monocytogenes in Ready-to-Eat FoodsFootnote 5 and the Food and Drugs Act (Section 4 (1))Footnote 6. In the absence of Health Canada standards, policies or guidelines, the assessment criteria are based on guidelines developed by international food safety authorities. Detailed information about the assessment criteria used for each commodity will be provided in the final reports which will be published after the surveys have concluded.

Table 1. Assessment criteria for indicator organisms
Analysis Product(s) Satisfactory assessment Investigative assessment Unsatisfactory assessment
Aerobic Colony Count (ACC)
  • Non-cow dairy milk
  • Plant-based milk or ice cream
≤ 106 CFU/g or mL > 106 CFU/g or mL Not Applicable (N/A)
Total coliforms
  • Non-cow dairy milk
  • Plant-based milk or ice cream
≤ 103 CFU or MPN/g or mL > 103 CFU or MPN/g or mL N/A
Generic Escherichia coli (E. coli) Non-cow pasteurized dairy milk cheese ≤ 102 CFU or MPN/g > 102 and ≤ 2x103 CFU or MPN/g > 2x103 CFU or MPN/g
Generic E. coli Fresh fruits and vegetables ≤ 102 MPN/g > 102 and ≤ 103 MPN/g > 103 MPN/g
Generic E. coli Ready-to-eat (RTE) plant-based meat ≤ 102 CFU or MPN/g > 102 and ≤ 103 CFU or MPN/g > 103 CFU or MPN/g
Generic E. coli
  • Plant-based cheese
  • Raw plant-based meat
≤ 102 CFU or MPN/g > 102 CFU or MPN/g N/A
Generic E. coli Raw dairy milk cheese ≤ 5x102 CFU or MPN/g > 5x102 and ≤ 2x103 CFU or MPN/g > 2x103 CFU or MPN/g
Table 2. Assessment criteria for pathogenic bacteria
Analysis Product(s) Satisfactory assessment Investigative assessment Unsatisfactory assessment
E. coli O157 All products tested for E.coli O157 Not detected/25 g N/A Detected
Non-O157 Shiga-toxigenic E. coli (STEC) All products tested for non-O157 STEC Not detected/25 g Detected N/A
Listeria monocytogenes (L. monocytogenes) Category 1 products Table Note a Not detected/25 g N/A Detected
L. monocytogenes Category 2A and B products Table Note a Not detected/25 g ≤ 102 CFU/g > 102 CFU/g
L. monocytogenes Microgreens Not detected/25 g Detected N/A
Salmonella All products tested for Salmonella Not detected/25 g N/A Detected
Staphylococcus aureus (S. aureus)
  • Plant-based cheese
  • Plant-based RTE meat
≤ 104 CFU/g > 104 CFU/g N/A
S. aureus Raw dairy milk cheese ≤ 103 CFU/g > 103 and ≤ 104 CFU/g > 104 CFU/g
S. aureus Non-cow pasteurized dairy milk cheese ≤ 102 CFU/g > 102 and ≤ 104 CFU/g > 104 CFU/g
Enterobacteriaceae Powdered infant formula Not detected/10 g Detected/10 g N/A
Cronobacter Powdered infant formula Not detected/125 g N/A Detected/125 g
Table 3. Assessment criteria for viruses and parasites
Analysis Product(s) Satisfactory assessment Investigative assessment Unsatisfactory assessment
All products tested for parasites and viruses Not detected Detected N/A

What were the survey preliminary results

Details about each targeted survey and test results (as of March 31, 2021) can be found in table 4.

Table 4. Survey results as of March 31, 2021
Fiscal year(s) Product Microorganisms tested Number of samples tested Satisfactory (S) Investigative (I) Unsatisfactory (U) Comments
2020/2021 Imported raw dairy milk cheese
  • L. monocytogenes
  • Salmonella
  • E. coli O157
  • S. aureus
  • Generic E. coli
486 486 0 0 All satisfactory
  • 2019/2020
  • 2020/2021
Non-cow pasteurized dairy milk cheese
  • L. monocytogenes
  • Salmonella
  • S. aureus
  • Generic E. coli
316 316 0 0 All satisfactory
  • 2019/2020
  • 2020/2021
Non-cow dairy milk
  • L. monocytogenes
  • Salmonella
  • ACC
  • Total coliforms
309 247 62 0
  • I=ACC (50)
  • I= Total coliforms (4)
  • I= ACC & total coliforms (8)
2020/2021 Domestic fresh-cut RTE prepackaged vegetable salads
  • L. monocytogenes
  • Salmonella
  • E. coli O157
  • Generic E. coli
15 15 0 0 All satisfactory
2020/2021 Imported fresh-cut RTE prepackaged vegetable salads
  • L. monocytogenes
  • Salmonella
  • E. coli O157
  • Generic E. coli
193 193 0 0 All satisfactory
2020/2021 Domestic fresh whole vegetables
  • E. coli O157
  • Salmonella
  • Generic E. coli
91 91 0 0 All satisfactory
2020/2021 Imported fresh whole vegetables
  • E. coli O157
  • Salmonella
  • Generic E. coli
196 196 0 0 All satisfactory
2020/2021 Domestic fresh whole fruits
  • E. coli O157
  • Salmonella
  • Generic E. coli
81 81 0 0 All satisfactory
2020/2021 Imported fresh whole fruits
  • E. coli O157
  • Salmonella
  • Generic E. coli
194 194 0 0 All satisfactory
2020/2021 Domestic whole leafy vegetables
  • E. coli O157
  • STEC
  • Generic E. coli
76 76 0 0 All satisfactory
2020/2021 Imported whole leafy vegetables
  • E. coli O157
  • STEC
  • Generic E. coli
102 102 0 0 All satisfactory
  • 2019/2020
  • 2020/2021
  • Imported
  • romaine lettuce
  • E. coli O157
  • Generic E. coli
457 457 0 0 All satisfactory
  • 2019/2020
  • 2020/2021
Imported romaine lettuce hearts
  • E. coli O157
  • Generic E. coli
682 681 1 0 I=Generic E. coli
  • 2019/2020
  • 2020/2021
Imported fresh-cut romaine lettuce
  • E. coli O157
  • Generic E. coli
516 516 0 0 All satisfactory
  • 2019/2020
  • 2020/2021
Fresh seed sprouts
  • E. coli O157
  • STEC
  • Generic E. coli
457 455 1 1
  • I=non-O157 STEC
  • U=Generic E. coli
2019/2020 Fresh microgreens
  • E. coli O157
  • STEC
  • Generic E. coli
  • Salmonella
  • L. monocytogenes
75 73 2 0
  • I=L. monocytogenes
  • I=Generic E. coli
2020/2021 Imported tahini Salmonella 71 70 N/A 1 U= Salmonella
2020/2021 Powdered infant formula Cronobacter Enterobacteriaceae 122 122 0 0 All satisfactory
2020/2021 Imported prepackaged leafy greens and salads
  • Cyclospora
  • Giardia
352 350 2 N/A
  • I= Cyclospora
  • I= Giardia
Imported fresh berries
  • Cyclospora Cryptosporidium
  • Toxoplasma
1396 1395 1 N/A I=Cyclospora
2019/2020 Imported green onions
  • Cyclospora Cryptosporidium
  • Toxoplasma
197 197 0 N/A All satisfactory
  • 2017/2018
  • 2018/2019
Imported fresh leafy herbs
  • Cyclospora Cryptosporidium
  • Toxoplasma
771 771 0 N/A All satisfactory
Imported fresh leafy herbs (seasonal focus on cilantro and basil)
  • Cyclospora Cryptosporidium
  • Toxoplasma
589 587 2 N/A I= Cyclospora (2)
2017/2018 Imported fresh leafy herbs
  • HAV
  • NoV (GI, GII)
799 798 1 N/A I=NoV (GII)
2020/2021 Domestic leafy greens and herbs
  • HAV
  • NoV (GI, GII)
122 122 0 N/A All satisfactory
2020/2021 Imported leafy greens and herbs
  • HAV
  • NoV (GI, GII)
138 138 0 N/A All satisfactory
  • 2018/2019
  • 2019/2020
Imported frozen- cut fruits
  • HAV
  • NoV (GI, GII)
484 484 0 N/A All satisfactory
2020/2021 Imported frozen scallops
  • HAV
  • NoV (GI, GII)
112 112 0 N/A All satisfactory
  • 2019/2020
  • 2020/2021
Plant-based cheese
  • L. monocytogenes
  • Salmonella
  • S. aureus
  • Generic E. coli
358 357 1 0 I=Generic E. coli
  • 2019/2020
  • 2020/2021
Plant-based ice cream
  • L. monocytogenes Salmonella
  • ACC
  • Total coliforms
518 515 3 0
  • I=L. monocytogenes
  • I= ACC & total coliforms (2)
  • 2019/2020
  • 2020/2021
Plant-based milk
  • L. monocytogenes Salmonella
  • ACC
  • Total coliforms
714 710 4 0 I=ACC
2020/2021 Plant-based RTE sausages / burgers
  • L. monocytogenes
  • Salmonella
  • S. aureus
  • Generic E. coli
563 563 0 0 All satisfactory
2020/2021 Plant-based Raw sausages / burgers
  • E. coli O157
  • Salmonella
  • Generic E. coli
288 286 2 0 I= Generic E. coli
Total (%) - - 11,840 11,756 (99.3) 82 (0.7) 2 (0.02) -

What is done with the survey results

All results are used to:

  • inform risk management decisions
  • support program design and re-design

While no illnesses were linked to the investigative and unsatisfactory samples, these results triggered appropriate follow-up actions such as:

  • facility inspections
  • additional sampling and testing
  • removal of affected products from the marketplace

Can I access the survey data

All of the results reported herein are considered preliminary, as the targeted survey are still ongoing. Therefore, the data will only be accessible to the public on the Open Government portal following the publication of the final report or scientific publication.

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